Contents
- AEGG08
B B Avants, C L Epstein, M Grossman, and J C Gee. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal., 12(1):26–41, February 2008.
- BSRG+20
Richard AI Bethlehem, Jakob Seidlitz, Rafael Romero-Garcia, Stavros Trakoshis, Guillaume Dumas, and Michael V Lombardo. A normative modelling approach reveals age-atypical cortical thickness in a subgroup of males with autism spectrum disorder. Communications biology, 3(1):1–10, 2020.
- BDV19
Patrick Beukema, Jörn Diedrichsen, and Timothy D Verstynen. Binding during sequence learning does not alter cortical representations of individual actions. J. Neurosci., 39(35):6968–6977, August 2019.
- Bre01
Leo Breiman. Statistical modeling: the two cultures (with comments and a rejoinder by the author). Statistical science, 16(3):199–231, 2001.
- BIM+13
Katherine S Button, John P A Ioannidis, Claire Mokrysz, Brian A Nosek, Jonathan Flint, Emma S J Robinson, and Marcus R Munafò. Power failure: why small sample size undermines the reliability of neuroscience. Nat. Rev. Neurosci., 14(5):365–376, May 2013.
- Can86
J Canny. A computational approach to edge detection. IEEE Trans. Pattern Anal. Mach. Intell., 8(6):679–698, June 1986.
- DMOconnorC+17
Adriana Di Martino, David O’connor, Bosi Chen, Kaat Alaerts, Jeffrey S Anderson, Michal Assaf, Joshua H Balsters, Leslie Baxter, Anita Beggiato, Sylvie Bernaerts, and others. Enhancing studies of the connectome in autism using the autism brain imaging data exchange ii. Scientific data, 4(1):1–15, 2017.
- Egl07
Ron Eglash. Broken metaphor: the master-slave analogy in technical literature. Technology and Culture, 48(2):360–369, 2007.
- EBS+17
Oscar Esteban, Daniel Birman, Marie Schaer, Oluwasanmi O Koyejo, Russell A Poldrack, and Krzysztof J Gorgolewski. MRIQC: advancing the automatic prediction of image quality in MRI from unseen sites. PLoS One, 12(9):e0184661, September 2017.
- EMB+19
Oscar Esteban, Christopher J Markiewicz, Ross W Blair, Craig A Moodie, A Ilkay Isik, Asier Erramuzpe, James D Kent, Mathias Goncalves, Elizabeth DuPre, Madeleine Snyder, Hiroyuki Oya, Satrajit S Ghosh, Jessey Wright, Joke Durnez, Russell A Poldrack, and Krzysztof J Gorgolewski. fMRIPrep: a robust preprocessing pipeline for functional MRI. Nat. Methods, 16(1):111–116, January 2019.
- Fis12
Bruce Fischl. Freesurfer. Neuroimage, 62(2):774–781, 2012.
- GCR+16
Matthew F Glasser, Timothy S Coalson, Emma C Robinson, Carl D Hacker, John Harwell, Essa Yacoub, Kamil Ugurbil, Jesper Andersson, Christian F Beckmann, Mark Jenkinson, Stephen M Smith, and David C Van Essen. A multi-modal parcellation of human cerebral cortex. Nature, 536(7615):171–178, 08 2016. URL: https://pubmed.ncbi.nlm.nih.gov/27437579, doi:10.1038/nature18933.
- GAAA+17
Krzysztof J Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M Mallar Chakravarty, Nathan W Churchill, Alexander Li Cohen, R Cameron Craddock, Gabriel A Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S Ghosh, J Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J Steele, Pierre-Olivier Quirion, Robert E Smith, Stephen C Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, and Russell A Poldrack. BIDS apps: improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput. Biol., 13(3):e1005209, March 2017.
- GPerez21
Brian E Granger and Fernando Pérez. Jupyter: thinking and storytelling with code and data. Computing in Science Engineering, 23(2):7–14, March 2021.
- Har49
Harry F Harlow. The formation of learning sets. Psychological review, 56(1):51, 1949.
- HMvdW+20
Charles R Harris, K Jarrod Millman, Stéfan J van der Walt, Ralf Gommers, Pauli Virtanen, David Cournapeau, Eric Wieser, Julian Taylor, Sebastian Berg, Nathaniel J Smith, Robert Kern, Matti Picus, Stephan Hoyer, Marten H van Kerkwijk, Matthew Brett, Allan Haldane, Jaime Fernández del Río, Mark Wiebe, Pearu Peterson, Pierre Gérard-Marchant, Kevin Sheppard, Tyler Reddy, Warren Weckesser, Hameer Abbasi, Christoph Gohlke, and Travis E Oliphant. Array programming with NumPy. Nature, 585(7825):357–362, September 2020.
- HPC+20
Mahan Hosseini, Michael Powell, John Collins, Chloe Callahan-Flintoft, William Jones, Howard Bowman, and Brad Wyble. I tried a bunch of things: the dangers of unexpected overfitting in classification of brain data. Neurosci. Biobehav. Rev., 119:456–467, December 2020.
- KNL+20
Allison Koenecke, Andrew Nam, Emily Lake, Joe Nudell, Minnie Quartey, Zion Mengesha, Connor Toups, John R Rickford, Dan Jurafsky, and Sharad Goel. Racial disparities in automated speech recognition. Proc. Natl. Acad. Sci. U. S. A., 117(14):7684–7689, April 2020.
- KAV+20
K S Krishnapriya, Vítor Albiero, Kushal Vangara, Michael C King, and Kevin W Bowyer. Issues related to face recognition accuracy varying based on race and skin tone. IEEE Transactions on Technology and Society, 1(1):8–20, March 2020.
- LBC+22
Jingwei Li, Danilo Bzdok, Jianzhong Chen, Angela Tam, Leon Qi Rong Ooi, Avram J Holmes, Tian Ge, Kaustubh R Patil, Mbemba Jabbi, Simon B Eickhoff, B T Thomas Yeo, and Sarah Genon. Cross-ethnicity/race generalization failure of behavioral prediction from resting-state functional connectivity. Sci Adv, 8(11):eabj1812, March 2022.
- MZPR02
Robert C MacCallum, Shaobo Zhang, Kristopher J Preacher, and Derek D Rucker. On the practice of dichotomization of quantitative variables. Psychol. Methods, 7(1):19–40, March 2002.
- MH80
D Marr and E Hildreth. Theory of edge detection. Proc. R. Soc. Lond. B Biol. Sci., 207(1167):187–217, February 1980.
- NAK21
Thomas Naselaris, Emily Allen, and Kendrick Kay. Extensive sampling for complete models of individual brains. Current Opinion in Behavioral Sciences, 40:45–51, August 2021.
- NIVDWD17
Juan Nunez-Iglesias, Stéfan Van Der Walt, and Harriet Dashnow. Elegant SciPy: The art of scientific python. " O'Reilly Media, Inc.", 2017.
- Ots79
Nobuyuki Otsu. A threshold selection method from gray-level histograms. IEEE Transactions on Systems, Man, and Cybernetics, 9(1):62–66, 1979. doi:10.1109/TSMC.1979.4310076.
- PGH10
Fernando Perez, Brian E Granger, and John D Hunter. Python: an ecosystem for scientific computing. Comput. Sci. Eng., 13(2):13–21, 2010.
- PBS+12
Jonathan D Power, Kelly A Barnes, Abraham Z Snyder, Bradley L Schlaggar, and Steven E Petersen. Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. Neuroimage, 59(3):2142–2154, February 2012.
- RTQ+15
Martin Reuter, M Dylan Tisdall, Abid Qureshi, Randy L Buckner, André J W van der Kouwe, and Bruce Fischl. Head motion during MRI acquisition reduces gray matter volume and thickness estimates. Neuroimage, 107:107–115, February 2015.
- RK20
Ariel Rokem and Kendrick Kay. Fractional ridge regression: a fast, interpretable reparameterization of ridge regression. Gigascience, November 2020.
- Shm10
Galit Shmueli. To explain or to predict? Statistical science, 25(3):289–310, 2010.
- SHK+14
Nitish Srivastava, Geoffrey Hinton, Alex Krizhevsky, Ilya Sutskever, and Ruslan Salakhutdinov. Dropout: a simple way to prevent neural networks from overfitting. The Journal of Machine Learning Research, 15(1):1929–1958, 2014.
- VHGK+01
John D Van Horn, Jeffrey S Grethe, Peter Kostelec, Jeffrey B Woodward, Javed A Aslam, Daniela Rus, Daniel Rockmore, and Michael S Gazzaniga. The functional magnetic resonance imaging data center (fmridc): the challenges and rewards of large–scale databasing of neuroimaging studies. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 356(1412):1323–1339, 2001.
- VH16
John Darrell Van Horn. Opinion: big data biomedicine offers big higher education opportunities. Proc. Natl. Acad. Sci. U. S. A., 113(23):6322–6324, June 2016.
- Var17
Gaël Varoquaux. Cross-validation failure: small sample sizes lead to large error bars. Neuroimage, June 2017.
- VGO+20
Pauli Virtanen, Ralf Gommers, Travis E Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright, Stéfan J van der Walt, Matthew Brett, Joshua Wilson, K Jarrod Millman, Nikolay Mayorov, Andrew R J Nelson, Eric Jones, Robert Kern, Eric Larson, C J Carey, İlhan Polat, Yu Feng, Eric W Moore, Jake VanderPlas, Denis Laxalde, Josef Perktold, Robert Cimrman, Ian Henriksen, E A Quintero, Charles R Harris, Anne M Archibald, Antônio H Ribeiro, Fabian Pedregosa, Paul van Mulbregt, and SciPy 1.0 Contributors. SciPy 1.0: fundamental algorithms for scientific computing in python. Nat. Methods, 17(3):261–272, March 2020.
- Wic14
Hadley Wickham. Tidy data. Journal of statistical software, 59(1):1–23, 2014.
- YW17
Tal Yarkoni and Jacob Westfall. Choosing prediction over explanation in psychology: lessons from machine learning. Perspectives on Psychological Science, 12(6):1100–1122, 2017.
- YWM14
Jason D Yeatman, Brian A Wandell, and Aviv A Mezer. Lifespan maturation and degeneration of human brain white matter. Nature communications, 5(1):1–12, 2014.
- YKK+14
Anastasia Yendiki, Kami Koldewyn, Sita Kakunoori, Nancy Kanwisher, and Bruce Fischl. Spurious group differences due to head motion in a diffusion MRI study. Neuroimage, 88:79–90, March 2014.